Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0746495 with 112 members (SH3 and PX domains 2B)

Gnathostomata / Euteleostomi / Sarcopterygii /

Completeness score: 0.94

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

91.4%

This HOG has 1622 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0747012	Gnathostomata	201		81.1%	5
HOG:E0790935	Metazoa	17		52.9%	5
HOG:E0793575	Opisthokonta	10		30.0%	5
HOG:E0793156	Opisthokonta	535		52.9%	4
HOG:E0781998	Eumetazoa	433		73.9%	4
HOG:E0793446	Opisthokonta	185		73.0%	4
HOG:E0761101	Bilateria	109		48.6%	4
HOG:E0647869	Panarthropoda	33		66.7%	4
HOG:E0790508	Metazoa	21		38.1%	4
HOG:E1012480	Bacteria	16		50.0%	4
HOG:E0562934	Rhabditida	12		66.7%	4
HOG:E1023714	Bacteria	11		27.3%	4
HOG:E0762212	Bilateria	10		70.0%	4
HOG:E0756582	Chordata	8		50.0%	4
HOG:E0533435	Mollusca	6		83.3%	4
HOG:E0790592	Metazoa	6		33.3%	4
HOG:E0053691	Amoebozoa	5		80.0%	4
HOG:E0765198	Bilateria	5		40.0%	4
HOG:E0771318	Bilateria	5		60.0%	4
HOG:E0763715	Bilateria	4		50.0%	4
HOG:E0750769	Gnathostomata	4		50.0%	4
HOG:E0770732	Bilateria	4		50.0%	4
HOG:E0538694	Lophotrochozoa	3		66.7%	4
HOG:E0877087	s__Clostridium_P perfringens	3		100.0%	4
HOG:E0793997	Opisthokonta	467		91.4%	3

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